libcarna-python

These are the Python bindings for the LibCarna library. The documentation of the original LibCarna library can be found at: https://kostrykin.github.io/LibCarna/html.

Getting Started

The easiest way to install and use the library is to use our pre-built Conda packages:

conda install bioconda::libcarna-python

To get started, it is best to consider our Examples below.

Note

If you encounter an error similar to “Failed expression: pimpl->eglDpy != EGL_NO_DISPLAY”, then you must install an EGL implementation suitable for your rendering hardware. For example, on Ubuntu Linux, sudo apt install libegl1 installs a meta package that automatically chooses the right implementation, or libegl-mesa0 for software rendering.

Examples

• Introduction
  • Meshes
  • Scenes
  • Rendering
  • Animations
• Cell Nuclei
  • Maximum Intensity Projection
  • Direct Volume Rendering
  • Pointwise Annotations
  • Mask Visualization
  • Track Visualization
• Computer Tomography
  • Maximum Intensity Projection
  • Hounsfield Unit Normalization
  • Direct Volume Rendering
  • Digitally Reconstructed Radiographs

API

• libcarna
• libcarna.base
• libcarna.base.math
• libcarna.data
• libcarna.egl
• libcarna.helpers
• libcarna.presets